Publications & Works

Publication Network
Articles 46
All (46)
SCI-E, SSCI, AHCI (44)
SCI-E, SSCI, AHCI, ESCI (44)
Scopus (45)
TRDizin (2)
Other Publications (1)

1. Diatom Communities in the Littoral Sediments of the Robert Island`s Lakes, South Shetland Islands, Antarctica

Akar B., Güney A., Özkan K., Avcı U., Kandemir R.
TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES , vol.24, pp.1-9, 2024 (SCI-Expanded, Scopus)

2. Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight

Nakashima J., Pattathil S., Avci U., Chin S., Alan Sparks J., Hahn M. G., et al.
NPJ MICROGRAVITY , vol.9, no.1, 2023 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

3. Cell Wall Glycan Changes in Different Brachypodium Tissues Give Insights into Monocot Biomass

Avci U.
Fermentation , vol.9, no.1, pp.52-62, 2023 (SCI-Expanded, Scopus) identifier identifier

4. Monoclonal antibodies against methyl glucuronoxylan epitopes for understanding xylan structure and modification

AVCI U.
TURKISH JOURNAL OF BOTANY , vol.47, no.3, 2023 (SCI-Expanded, Scopus, TRDizin) Creative Commons License identifier identifier

5. Trafficking of Xylan to Plant Cell Walls

Avci U.
Biomass , vol.2, no.3, pp.188-194, 2022 (Scopus) Sustainable Development identifier

6. A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning

AVCI U., Nakashima J.
PLANT GRAVITROPISM , vol.2368, pp.153-163, 2022 (SCI-Expanded, Scopus) identifier identifier

7. Yüksek Frekanslı Elektromanyetik Radyasyon ve Bitki Gelişimi

AVCI U.
Recep Tayyip Erdoğan Üniversitesi Fen ve Mühendislik Bilimleri Dergisi , vol.1, no.1, pp.68-73, 2020 (Peer-Reviewed Journal)

8. Effects of Extractive Ammonia Pretreatment on the Ultrastructure and Glycan Composition of Corn Stover

Avci U., Zhou X., Pattathil S., da Costa Sousa L., Hahn M. G., Dale B., et al.
Frontiers in Energy Research , vol.7, 2019 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

9. Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass

da Costa R. M. F., Pattathil S., AVCI U., Winters A., Hahn M. G., Bosch M.
BIOTECHNOLOGY FOR BIOFUELS , vol.12, 2019 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier identifier identifier

10. The alpha-Aurora Kinases Function in Vascular Development in Arabidopsis

Lee K., Utku A., Qi L., Wang H.
PLANT AND CELL PHYSIOLOGY , vol.60, no.1, pp.188-201, 2019 (SCI-Expanded, Scopus) identifier identifier identifier

11. Changes in the abundance of cell wall apiogalacturonan and xylogalacturonan and conservation of rhamnogalacturonan II structure during the diversification of the Lemnoideae

Avci U., Peña M. J., O’Neill M. A.
Planta , vol.247, no.4, pp.953-971, 2018 (SCI-Expanded, Scopus) Sustainable Development identifier identifier

12. Cell wall changes during the formation of aerenchyma in sugarcane roots

Leite D., Grandis A., Tavares E., Piovezani A., Pattathil S., Avci U., et al.
Annals of Botany , vol.120, no.5, pp.693-708, 2017 (SCI-Expanded, Scopus) identifier identifier

13. A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin

da Costa R. M. F., Pattathil S., Avci U., Lee S. J., Hazen S. P., Winters A., et al.
New Phytologist , vol.213, no.4, pp.1710-1725, 2017 (SCI-Expanded, Scopus) identifier identifier

14. Interactions Between Frankliniella fusca and Pantoea ananatis in the Center Rot Epidemic of Onion (Allium cepa)

Dutta B., Gitaitis R., Barman A., AVCI U., Marasigan K., Srinivasan R.
PHYTOPATHOLOGY , vol.106, no.9, pp.956-962, 2016 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier identifier

15. Next-generation ammonia pretreatment enhances cellulosic biofuel production

Da Costa Sousa L., Jin M., Chundawat S. P. S., Bokade V., Tang X., Azarpira A., et al.
Energy and Environmental Science , vol.9, no.4, pp.1215-1223, 2016 (SCI-Expanded, Scopus) Creative Commons License identifier

16. Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae)

Raimundo S. C., Avci U., Hopper C., Pattathil S., Hahn M. G., Popper Z. A.
Planta , vol.243, no.2, pp.337-354, 2016 (SCI-Expanded, Scopus) identifier identifier

17. Plant biomass: Insights from imaging cell walls using molecular probes

Avci U.
Turkish Journal of Botany , vol.40, no.6, pp.561-565, 2016 (SCI-Expanded, Scopus, TRDizin) Creative Commons License Sustainable Development identifier

18. Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Srivastava A. C., Chen F., Ray T., Pattathil S., Peña M. J., Avci U., et al.
Biotechnology for Biofuels , vol.8, no.1, 2015 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

19. Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls

Muszyński A., O’Neill M. A., Ramasamy E., Pattathil S., Avci U., Peña M. J., et al.
Planta , vol.242, no.5, pp.1123-1138, 2015 (SCI-Expanded, Scopus) identifier identifier

20. Pathways of bacterial invasion and watermelon seed infection by Acidovorax citrulli

Dutta B., Ha Y., Lessl J., Avci U., Sparks A., Johnson K., et al.
Plant Pathology , vol.64, no.3, pp.537-544, 2015 (SCI-Expanded, Scopus) Sustainable Development identifier

21. Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in arabidopsis

Kong Y., Peña M. J., Renna L., Avci U., Pattathil S., Tuomivaara S. T., et al.
Plant Physiology , vol.167, no.4, pp.1296-1306, 2015 (SCI-Expanded, Scopus) Sustainable Development identifier identifier

22. Immunological approaches to biomass characterization and utilization

Pattathil S., Avci U., Zhang T., Cardenas C. L., Hahn M. G.
Frontiers in Bioengineering and Biotechnology , vol.3, no.OCT, 2015 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier

23. A flat embedding method to orient thin biological samples for sectioning

Avci U., Nakashima J.
Methods in Molecular Biology , vol.1309, pp.13-22, 2015 (SCI-Expanded, Scopus) Sustainable Development identifier identifier

24. Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis

Du Q., Avci U., Li S., Gallego-Giraldo L., Pattathil S., Qi L., et al.
Plant Journal , vol.83, no.3, pp.388-400, 2015 (SCI-Expanded, Scopus) identifier identifier

25. Changes in Cell Wall Properties Coincide with Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells

Tan L., Pu Y., Pattathil S., AVCI U., Qian J., Arter A., et al.
PLOS ONE , vol.9, no.12, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

26. Loss of arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition

Hao Z., Avci U., Tan L., Zhu X., Glushka J., Pattathil S., et al.
Frontiers in Plant Science , vol.5, no.JUL, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

27. Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation

Zhang X., Rogowski A., Zhao L., Hahn M. G., Avci U., Knox J. P., et al.
Journal of Biological Chemistry , vol.289, no.4, pp.2002-2012, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

28. Transmission of pantoea ananatis and P. agglomerans, Causal agents of center Rot of Onion (Allium cepa), by onion thrips (thrips tabaci) through feces

Dutta B., Barman A., Srinivasan R., Avci U., Ullman D., Langston D., et al.
Phytopathology , vol.104, no.8, pp.812-819, 2014 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier identifier

29. Cotton Fiber Cell Walls of Gossypium hirsutum and Gossypium barbadense Have Differences Related to Loosely-Bound Xyloglucan

Avci U., Pattathil S., Singh B., Brown V. L., Hahn M. G., Haigler C. H.
PLoS ONE , vol.8, no.2, 2013 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

30. An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein

Tan L., Eberhard S., Pattathil S., Warder C., Glushka J., Yuan C., et al.
Plant Cell , vol.25, no.1, pp.270-287, 2013 (SCI-Expanded, Scopus) identifier identifier

31. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein

Urbanowicz B. R., Peña M. J., Ratnaparkhe S., Avci U., Backe J., Steet H. F., et al.
Proceedings of the National Academy of Sciences of the United States of America , vol.109, no.35, pp.14253-14258, 2012 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

32. Immunological approaches to plant cell wall and biomass characterization: Immunolocalization of glycan epitopes

Avci U., Pattathil S., Hahn M. G.
Methods in Molecular Biology , vol.908, pp.73-82, 2012 (SCI-Expanded, Scopus) identifier identifier

33. Immunological approaches to plant cell wall and biomass characterization: Glycome profiling

Pattathil S., Avci U., Miller J. S., Hahn M. G.
Methods in Molecular Biology , vol.908, pp.61-72, 2012 (SCI-Expanded, Scopus) identifier identifier

34. Location of Acidovorax citrulli in infested watermelon seeds is influenced by the pathway of bacterial invasion

Dutta B., Avci U., Hahn M., Walcott R.
Phytopathology , vol.102, no.5, pp.461-468, 2012 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier identifier

35. The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes

Kulkarni A. R., Peña M. J., Avci U., Mazumder K., Urbanowicz B. R., Pattathil S., et al.
Glycobiology , vol.22, no.3, pp.439-451, 2012 (SCI-Expanded, Scopus) Sustainable Development identifier identifier

36. Mutations in multiple XXT genes of arabidopsis reveal the complexity of xyloglucan biosynthesis

Zabotina O. A., Avci U., Cavalier D., Pattathil S., Chou Y., Eberhard S., et al.
Plant Physiology , vol.159, no.4, pp.1367-1384, 2012 (SCI-Expanded, Scopus) identifier identifier

37. Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production

DeMartini J. D., Pattathil S., Avci U., Szekalski K., Mazumder K., Hahn M. G., et al.
ENERGY & ENVIRONMENTAL SCIENCE , vol.4, no.10, pp.4332-4339, 2011 (SCI-Expanded, Scopus) identifier

38. Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen

Joshi C. P., Thammannagowda S., Fujino T., Gou J., Avci U., Haigler C. H., et al.
Molecular Plant , vol.4, no.2, pp.331-345, 2011 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

39. Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

Wang H., Avci U., Nakashima J., Hahn M. G., Chen F., Dixon R. A.
Proceedings of the National Academy of Sciences of the United States of America , vol.107, no.51, pp.22338-22343, 2010 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development identifier identifier

40. A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies

Pattathil S., Avci U., Baldwin D., Swennes A. G., McGill J. A., Popper Z., et al.
PLANT PHYSIOLOGY , vol.153, no.2, pp.514-525, 2010 (SCI-Expanded, Scopus) identifier identifier

41. Monoclonal antibodies against diverse xyloglucan structures as probes for plant cell wall chemistry and ultrastructure

Tuomivaara S., AVCI U., O'Neill M., Hahn M. G., York W. S.
FASEB JOURNAL , vol.24, 2010 (SCI-Expanded, Scopus) identifier

42. The Bioenergy Science Center (BESC) and Overcoming Recalcitrance of Populus to Biofuel Production

Mohnen D., Biswal A., Hao Zhangying H. Z., Sholes T., Gelineo-Albersheim I., Hunt K., et al.
IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL , vol.46, 2010 (SCI-Expanded, Scopus) identifier

43. Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis

Kong Y., Zhou G., Avci U., Gu X., Jones C., Yin Y., et al.
MOLECULAR PLANT , vol.2, no.5, pp.1040-1050, 2009 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

44. A Specialized Outer Layer of the Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles

Singh B., Avci U., Inwood S. E. E., Grimson M. J., Landgraf J., Mohnen D., et al.
PLANT PHYSIOLOGY , vol.150, no.2, pp.684-699, 2009 (SCI-Expanded, Scopus) Sustainable Development identifier identifier

45. Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

Avci U., Petzold H. E., Ismail I. O., Beers E. P., Haigler C. H.
PLANT JOURNAL , vol.56, no.2, pp.303-315, 2008 (SCI-Expanded, Scopus) Sustainable Development identifier identifier identifier

46. XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem

Zhao C., Avci U., Grant E. H., Haigler C. H., Beers E. P.
PLANT JOURNAL , vol.53, no.3, pp.425-436, 2008 (SCI-Expanded, Scopus) identifier identifier identifier
Papers Presented at Peer-Reviewed Scientific Conferences 14

1. Overcoming and understanding biomass recalcitrance

Avcı U.
5. AAB PLANTED CONGRESS, Samsun, Turkey, 30 October - 01 November 2024, pp.38, (Summary Text) Sustainable Development

2. Understanding Transport Routes of Xylan Polysaccharide to Plant Cell Walls

AVCI U.
4th Bioenergy Studies Symposium, Turkey, 27 May 2022, (Summary Text)

3. Turkish blanket bogs as national biodiversity conservation areas

AVCI U., AKAR B.
1st International Symposium of Biodiversity Studies, Ankara, Turkey, 23 - 25 May 2022, pp.28, (Summary Text)

4. Algal biodiversity of Turkish blanket bogs

AKAR B., AVCI U.
1st International Symposium of Biodiversity Studies, Ankara, Turkey, 23 - 25 May 2022, pp.53, (Summary Text)

5. Diversity of Plant Cell Walls

AVCI U.
Eurasian Congress on Molecular Biotechnology, 21 - 23 September 2019, (Summary Text)

6. Illuminating Plant Cell Walls

AVCI U.
International Congress onBiological and Medical Science, 31 October - 03 November 2018, (Summary Text)

7. Imaging cell walls of a model grass Brachypodiumdistachyon

AVCI U.
22nd edition of International Conference on Biotechnology, 16 - 17 April 2018, (Summary Text)

8. Imaging plant cell walls by using molecular probes

AVCI U.
International Conference on Technology, Engineering and Science, 26 November - 29 December 2017, (Summary Text)

9. Insights from imaging plant cell walls by using molecular probes

AVCI U.
International Conference on Biological Sciences, Konya, Turkey, 21 - 23 October 2016, (Summary Text)

10. The cell walls of Spirodela polyrhiza greater duckweed Polysacharide composition and distribution

AVCI U., PATTATHIL S., Michael G H., ONEILL M. A.
Gordon Research Conference on Plant Cell Walls, Waltham, 12 - 17 July 2015

11. Effects of extractive ammonia pretreatment on the ultrastructure and glycan composition of plant cell walls

AVCI U., Leonardo da Costa S., Sivakumar P., Venkatesh B., Michael G H., Bruce E D.
37th Symposium on Biotechnology for Fuels and Chemicals, San Diego, United States Of America, 27 - 30 April 2015

12. Characterization of monoclonal antibodies against xylan epitopes

AVCI U., Pattathil S., Clay R., Mazumder K., York W., Hahn M.
The XIIIth Cell Wall Meeting, Nantes, France, 7 - 12 July 2013

13. Insights into plant cell wall structure and dynamics using glycan directed monoclonal antibodies

AVCI U.
5th Annual BioEnergy Science Retreat, Chattanooga, United States Of America, 18 July 2011

14. Distribution of cell wall glycans in switchgrass Panicum virgatum

AVCI U.
33rd Symposium on Biotechnology for Fuels and Chemicals, 02 May 2011
Books 4

1. Genome Editing of Gene Families for Crop Improvement

Avcı U., Sipahi H.
in: A Roadmap for Plant Genome Editing, Agnès Ricroch • Dennis Eriksson Dragana Miladinović • Jeremy Sweet Katrijn Van Laere • Ewa Woźniak-Gientka, Editor, Springer, Zug, pp.3-15, 2024

2. A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning

AVCI U., Nakashima J.
in: Plant Gravitropism, Elison B. Blancaflor, Editor, Humana, New York, NY, New York, pp.153-163, 2022

3. Bitki Fizyolojisi Laboratuvarı

KADIOĞLU A., SAĞLAM A., AVCI U.
Gündüz Ofset , Matbaacılık ve yayıncılık, 2016

4. A Flat Embedding Method to Orient Thin Biological Samples for Sectioning

AVCI U., Nakashima J.
in: Plant Gravitropism, Elison B. Blancaflor, Editor, Springer New York, pp.13-22, 2015
Metrics

Publication

64

Publication (WoS)

44

Publication (Scopus)

45

Citation (WoS)

752

H-Index (WoS)

8

Citation (Scopus)

1810

H-Index (Scopus)

20

Project

9

Thesis Advisory

2

Open Access

20
UN Sustainable Development Goals