Prof. Dr. UTKU AVCI

Yayın Ağı

Makaleler 46

1. Diatom Communities in the Littoral Sediments of the Robert Island`s Lakes, South Shetland Islands, Antarctica

Akar B., Güney A., Özkan K., Avcı U., Kandemir R.

TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES , cilt.24, ss.1-9, 2024 (SCI-Expanded)

2. Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight

Nakashima J., Pattathil S., Avci U., Chin S., Alan Sparks J., Hahn M. G., et al.

NPJ MICROGRAVITY , cilt.9, sa.1, 2023 (SCI-Expanded)

3. Cell Wall Glycan Changes in Different Brachypodium Tissues Give Insights into Monocot Biomass

Avci U.

Fermentation , cilt.9, sa.1, ss.52-62, 2023 (SCI-Expanded)

4. Monoclonal antibodies against methyl glucuronoxylan epitopes for understanding xylan structure and modification

AVCI U.

TURKISH JOURNAL OF BOTANY , cilt.47, sa.3, 2023 (SCI-Expanded)

5. Trafficking of Xylan to Plant Cell Walls

Avci U.

Biomass , cilt.2, sa.3, ss.188-194, 2022 (Scopus) Sürdürülebilir Kalkınma

6. A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning

AVCI U., Nakashima J.

PLANT GRAVITROPISM , cilt.2368, ss.153-163, 2022 (SCI-Expanded)

7. Yüksek Frekanslı Elektromanyetik Radyasyon ve Bitki Gelişimi

AVCI U.

Recep Tayyip Erdoğan Üniversitesi Fen ve Mühendislik Bilimleri Dergisi , cilt.1, sa.1, ss.68-73, 2020 (Hakemli Dergi)

8. Effects of Extractive Ammonia Pretreatment on the Ultrastructure and Glycan Composition of Corn Stover

Avci U., Zhou X., Pattathil S., da Costa Sousa L., Hahn M. G., Dale B., et al.

Frontiers in Energy Research , cilt.7, 2019 (SCI-Expanded)

9. Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass

da Costa R. M. F., Pattathil S., AVCI U., Winters A., Hahn M. G., Bosch M.

BIOTECHNOLOGY FOR BIOFUELS , cilt.12, 2019 (SCI-Expanded)

10. The alpha-Aurora Kinases Function in Vascular Development in Arabidopsis

Lee K., Utku A., Qi L., Wang H.

PLANT AND CELL PHYSIOLOGY , cilt.60, sa.1, ss.188-201, 2019 (SCI-Expanded)

11. Changes in the abundance of cell wall apiogalacturonan and xylogalacturonan and conservation of rhamnogalacturonan II structure during the diversification of the Lemnoideae

Avci U., Peña M. J., O’Neill M. A.

Planta , cilt.247, sa.4, ss.953-971, 2018 (SCI-Expanded) Sürdürülebilir Kalkınma

12. Cell wall changes during the formation of aerenchyma in sugarcane roots

Leite D., Grandis A., Tavares E., Piovezani A., Pattathil S., Avci U., et al.

Annals of Botany , cilt.120, sa.5, ss.693-708, 2017 (SCI-Expanded)

13. A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin

da Costa R. M. F., Pattathil S., Avci U., Lee S. J., Hazen S. P., Winters A., et al.

New Phytologist , cilt.213, sa.4, ss.1710-1725, 2017 (SCI-Expanded)

14. Interactions Between Frankliniella fusca and Pantoea ananatis in the Center Rot Epidemic of Onion (Allium cepa)

Dutta B., Gitaitis R., Barman A., AVCI U., Marasigan K., Srinivasan R.

PHYTOPATHOLOGY , cilt.106, sa.9, ss.956-962, 2016 (SCI-Expanded)

15. Next-generation ammonia pretreatment enhances cellulosic biofuel production

Da Costa Sousa L., Jin M., Chundawat S. P. S., Bokade V., Tang X., Azarpira A., et al.

Energy and Environmental Science , cilt.9, sa.4, ss.1215-1223, 2016 (SCI-Expanded)

16. Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae)

Raimundo S. C., Avci U., Hopper C., Pattathil S., Hahn M. G., Popper Z. A.

Planta , cilt.243, sa.2, ss.337-354, 2016 (SCI-Expanded)

17. Plant biomass: Insights from imaging cell walls using molecular probes

Avci U.

Turkish Journal of Botany , cilt.40, sa.6, ss.561-565, 2016 (SCI-Expanded)

18. Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Srivastava A. C., Chen F., Ray T., Pattathil S., Peña M. J., Avci U., et al.

Biotechnology for Biofuels , cilt.8, sa.1, 2015 (SCI-Expanded)

19. Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls

Muszyński A., O’Neill M. A., Ramasamy E., Pattathil S., Avci U., Peña M. J., et al.

Planta , cilt.242, sa.5, ss.1123-1138, 2015 (SCI-Expanded)

20. Pathways of bacterial invasion and watermelon seed infection by Acidovorax citrulli

Dutta B., Ha Y., Lessl J., Avci U., Sparks A., Johnson K., et al.

Plant Pathology , cilt.64, sa.3, ss.537-544, 2015 (SCI-Expanded) Sürdürülebilir Kalkınma

21. Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in arabidopsis

Kong Y., Peña M. J., Renna L., Avci U., Pattathil S., Tuomivaara S. T., et al.

Plant Physiology , cilt.167, sa.4, ss.1296-1306, 2015 (SCI-Expanded) Sürdürülebilir Kalkınma

22. Immunological approaches to biomass characterization and utilization

Pattathil S., Avci U., Zhang T., Cardenas C. L., Hahn M. G.

Frontiers in Bioengineering and Biotechnology , cilt.3, sa.OCT, 2015 (SCI-Expanded)

23. A flat embedding method to orient thin biological samples for sectioning

Avci U., Nakashima J.

Methods in Molecular Biology , cilt.1309, ss.13-22, 2015 (SCI-Expanded) Sürdürülebilir Kalkınma

24. Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis

Du Q., Avci U., Li S., Gallego-Giraldo L., Pattathil S., Qi L., et al.

Plant Journal , cilt.83, sa.3, ss.388-400, 2015 (SCI-Expanded)

25. Changes in Cell Wall Properties Coincide with Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells

Tan L., Pu Y., Pattathil S., AVCI U., Qian J., Arter A., et al.

PLOS ONE , cilt.9, sa.12, 2014 (SCI-Expanded)

26. Loss of arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition

Hao Z., Avci U., Tan L., Zhu X., Glushka J., Pattathil S., et al.

Frontiers in Plant Science , cilt.5, sa.JUL, 2014 (SCI-Expanded)

27. Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation

Zhang X., Rogowski A., Zhao L., Hahn M. G., Avci U., Knox J. P., et al.

Journal of Biological Chemistry , cilt.289, sa.4, ss.2002-2012, 2014 (SCI-Expanded)

28. Transmission of pantoea ananatis and P. agglomerans, Causal agents of center Rot of Onion (Allium cepa), by onion thrips (thrips tabaci) through feces

Dutta B., Barman A., Srinivasan R., Avci U., Ullman D., Langston D., et al.

Phytopathology , cilt.104, sa.8, ss.812-819, 2014 (SCI-Expanded)

29. Cotton Fiber Cell Walls of Gossypium hirsutum and Gossypium barbadense Have Differences Related to Loosely-Bound Xyloglucan

Avci U., Pattathil S., Singh B., Brown V. L., Hahn M. G., Haigler C. H.

PLoS ONE , cilt.8, sa.2, 2013 (SCI-Expanded)

30. An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein

Tan L., Eberhard S., Pattathil S., Warder C., Glushka J., Yuan C., et al.

Plant Cell , cilt.25, sa.1, ss.270-287, 2013 (SCI-Expanded)

31. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein

Urbanowicz B. R., Peña M. J., Ratnaparkhe S., Avci U., Backe J., Steet H. F., et al.

Proceedings of the National Academy of Sciences of the United States of America , cilt.109, sa.35, ss.14253-14258, 2012 (SCI-Expanded)

32. Immunological approaches to plant cell wall and biomass characterization: Immunolocalization of glycan epitopes

Avci U., Pattathil S., Hahn M. G.

Methods in Molecular Biology , cilt.908, ss.73-82, 2012 (SCI-Expanded)

33. Immunological approaches to plant cell wall and biomass characterization: Glycome profiling

Pattathil S., Avci U., Miller J. S., Hahn M. G.

Methods in Molecular Biology , cilt.908, ss.61-72, 2012 (SCI-Expanded)

34. Location of Acidovorax citrulli in infested watermelon seeds is influenced by the pathway of bacterial invasion

Dutta B., Avci U., Hahn M., Walcott R.

Phytopathology , cilt.102, sa.5, ss.461-468, 2012 (SCI-Expanded)

35. The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes

Kulkarni A. R., Peña M. J., Avci U., Mazumder K., Urbanowicz B. R., Pattathil S., et al.

Glycobiology , cilt.22, sa.3, ss.439-451, 2012 (SCI-Expanded) Sürdürülebilir Kalkınma

36. Mutations in multiple XXT genes of arabidopsis reveal the complexity of xyloglucan biosynthesis

Zabotina O. A., Avci U., Cavalier D., Pattathil S., Chou Y., Eberhard S., et al.

Plant Physiology , cilt.159, sa.4, ss.1367-1384, 2012 (SCI-Expanded)

37. Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production

DeMartini J. D., Pattathil S., Avci U., Szekalski K., Mazumder K., Hahn M. G., et al.

ENERGY & ENVIRONMENTAL SCIENCE , cilt.4, sa.10, ss.4332-4339, 2011 (SCI-Expanded)

38. Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen

Joshi C. P., Thammannagowda S., Fujino T., Gou J., Avci U., Haigler C. H., et al.

Molecular Plant , cilt.4, sa.2, ss.331-345, 2011 (SCI-Expanded)

39. Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

Wang H., Avci U., Nakashima J., Hahn M. G., Chen F., Dixon R. A.

Proceedings of the National Academy of Sciences of the United States of America , cilt.107, sa.51, ss.22338-22343, 2010 (SCI-Expanded)

40. A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies

Pattathil S., Avci U., Baldwin D., Swennes A. G., McGill J. A., Popper Z., et al.

PLANT PHYSIOLOGY , cilt.153, sa.2, ss.514-525, 2010 (SCI-Expanded)

41. Monoclonal antibodies against diverse xyloglucan structures as probes for plant cell wall chemistry and ultrastructure

Tuomivaara S., AVCI U., O'Neill M., Hahn M. G., York W. S.

FASEB JOURNAL , cilt.24, 2010 (SCI-Expanded)

42. The Bioenergy Science Center (BESC) and Overcoming Recalcitrance of Populus to Biofuel Production

Mohnen D., Biswal A., Hao Zhangying H. Z., Sholes T., Gelineo-Albersheim I., Hunt K., et al.

IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL , cilt.46, 2010 (SCI-Expanded)

43. Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis

Kong Y., Zhou G., Avci U., Gu X., Jones C., Yin Y., et al.

MOLECULAR PLANT , cilt.2, sa.5, ss.1040-1050, 2009 (SCI-Expanded)

44. A Specialized Outer Layer of the Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles

Singh B., Avci U., Inwood S. E. E., Grimson M. J., Landgraf J., Mohnen D., et al.

PLANT PHYSIOLOGY , cilt.150, sa.2, ss.684-699, 2009 (SCI-Expanded) Sürdürülebilir Kalkınma

45. Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

Avci U., Petzold H. E., Ismail I. O., Beers E. P., Haigler C. H.

PLANT JOURNAL , cilt.56, sa.2, ss.303-315, 2008 (SCI-Expanded) Sürdürülebilir Kalkınma

46. XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem

Zhao C., Avci U., Grant E. H., Haigler C. H., Beers E. P.

PLANT JOURNAL , cilt.53, sa.3, ss.425-436, 2008 (SCI-Expanded)

Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 14

1. Overcoming and understanding biomass recalcitrance

Avcı U.

5. AAB PLANTED CONGRESS, Samsun, Türkiye, 30 Ekim - 01 Kasım 2024, ss.38, (Özet Bildiri) Sürdürülebilir Kalkınma

2. Understanding Transport Routes of Xylan Polysaccharide to Plant Cell Walls

AVCI U.

4th Bioenergy Studies Symposium, Türkiye, 27 Mayıs 2022, (Özet Bildiri)

3. Turkish blanket bogs as national biodiversity conservation areas

AVCI U., AKAR B.

1st International Symposium of Biodiversity Studies, Ankara, Türkiye, 23 - 25 Mayıs 2022, ss.28, (Özet Bildiri)

4. Algal biodiversity of Turkish blanket bogs

AKAR B., AVCI U.

1st International Symposium of Biodiversity Studies, Ankara, Türkiye, 23 - 25 Mayıs 2022, ss.53, (Özet Bildiri)

5. Diversity of Plant Cell Walls

AVCI U.

Eurasian Congress on Molecular Biotechnology, 21 - 23 Eylül 2019, (Özet Bildiri)

6. Illuminating Plant Cell Walls

AVCI U.

International Congress onBiological and Medical Science, 31 Ekim - 03 Kasım 2018, (Özet Bildiri)

7. Imaging cell walls of a model grass Brachypodiumdistachyon

AVCI U.

22nd edition of International Conference on Biotechnology, 16 - 17 Nisan 2018, (Özet Bildiri)

8. Imaging plant cell walls by using molecular probes

AVCI U.

International Conference on Technology, Engineering and Science, 26 Kasım - 29 Aralık 2017, (Özet Bildiri)

9. Insights from imaging plant cell walls by using molecular probes

AVCI U.

International Conference on Biological Sciences, Konya, Türkiye, 21 - 23 Ekim 2016, (Özet Bildiri)

10. The cell walls of Spirodela polyrhiza greater duckweed Polysacharide composition and distribution

AVCI U., PATTATHIL S., Michael G H., ONEILL M. A.

Gordon Research Conference on Plant Cell Walls, Waltham, 12 - 17 Temmuz 2015

11. Effects of extractive ammonia pretreatment on the ultrastructure and glycan composition of plant cell walls

AVCI U., Leonardo da Costa S., Sivakumar P., Venkatesh B., Michael G H., Bruce E D.

37th Symposium on Biotechnology for Fuels and Chemicals, San Diego, Amerika Birleşik Devletleri, 27 - 30 Nisan 2015

12. Characterization of monoclonal antibodies against xylan epitopes

AVCI U., Pattathil S., Clay R., Mazumder K., York W., Hahn M.

The XIIIth Cell Wall Meeting, Nantes, Fransa, 7 - 12 Temmuz 2013

13. Insights into plant cell wall structure and dynamics using glycan directed monoclonal antibodies

AVCI U.

5th Annual BioEnergy Science Retreat, Chattanooga, Amerika Birleşik Devletleri, 18 Temmuz 2011

14. Distribution of cell wall glycans in switchgrass Panicum virgatum

AVCI U.

33rd Symposium on Biotechnology for Fuels and Chemicals, 02 Mayıs 2011

Kitaplar 4

Metrikler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

752

H-İndeks (WoS)

Atıf (Scopus)

1810

H-İndeks (Scopus)

Proje

Tez Danışmanlığı

Açık Erişim

BM Sürdürülebilir Kalkınma Amaçları

Yayınlar & Eserler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

H-İndeks (Scopus)

Proje

Tez Danışmanlığı

Açık Erişim