Metrikler
Yayın
64
Açık Erişim
20
BM Sürdürülebilir Kalkınma Amaçları
Eğitim Bilgileri
2003 - 2007
2003 - 2007Doktora
North Carolina State University, College of Agriculture and Life Sciences, Amerika Birleşik Devletleri
1997 - 2000
1997 - 2000Lisans
Karadeniz Teknik Üniversitesi, Türkiye
Araştırma Alanları
Tarımsal Bilimler
Ziraat
Yaşam Bilimleri
Bitki Biyolojisi
Biyokimya
Biyoteknoloji
Mikrobiyoloji
Moleküler Biyoloji ve Genetik
Temel Bilimler
Akademik Ünvanlar / Görevler
2023 - Devam Ediyor
2023 - Devam EdiyorProf. Dr.
Eskişehir Osmangazi Üniversitesi, ZİRAAT FAKÜLTESİ, TARIMSAL BİYOTEKNOLOJİ BÖLÜMÜ
2021 - 2023
2021 - 2023Doç. Dr.
Eskişehir Osmangazi Üniversitesi, ZİRAAT FAKÜLTESİ, TARIMSAL BİYOTEKNOLOJİ BÖLÜMÜ
2019 - 2021
2019 - 2021Doç. Dr.
Recep Tayyip Erdoğan Üniversitesi, Mühendislik Fakültesi, Biyomühendislik Bölümü
2015 - 2019
2015 - 2019Dr. Öğr. Üyesi
Recep Tayyip Erdoğan Üniversitesi, Mühendislik Fakültesi, Biyomühendislik Bölümü
Yönetimsel Görevler
2018 - 2020
2018 - 2020Bölüm Başkanı
Recep Tayyip Erdoğan Üniversitesi, Mühendislik Ve Mimarlık Fakültesi, Biyomühendislik
Akademi Dışı Deneyim
2018 - Devam Ediyor
2018 - Devam EdiyorAraştırmacı
Teknoloji Geliştirme Bölgesi, Pros Biyoteknoloji, AR-GE, Araştırmacı
2008 - 2015
2008 - 2015Doktora sonrası araştırmacı
University of Georgia, Doktora sonrası araştırmacı
2003 - 2007
2003 - 2007Doktora öğrencisi Research Assistant
North Carolina State University, Doktora öğrencisi Research Assistant
Makaleler
Tümü (46)
SCI-E, SSCI, AHCI (44)
SCI-E, SSCI, AHCI, ESCI (44)
Scopus (45)
TRDizin (2)
Diğer Yayınlar (1)
2024
20241. Diatom Communities in the Littoral Sediments of the Robert Island`s Lakes, South Shetland Islands, Antarctica
Akar B., Güney A., Özkan K., Avcı U., Kandemir R.
TURKISH JOURNAL OF FISHERIES AND AQUATIC SCIENCES , cilt.24, ss.1-9, 2024 (SCI-Expanded, Scopus)
2023
20232. Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight
Nakashima J., Pattathil S., Avci U., Chin S., Alan Sparks J., Hahn M. G., et al.
NPJ MICROGRAVITY
, cilt.9, sa.1, 2023 (SCI-Expanded, Scopus)
2023
20233. Cell Wall Glycan Changes in Different Brachypodium Tissues Give Insights into Monocot Biomass
Avci U.
Fermentation
, cilt.9, sa.1, ss.52-62, 2023 (SCI-Expanded, Scopus)
2023
20234. Monoclonal antibodies against methyl glucuronoxylan epitopes for understanding xylan structure and modification
AVCI U.
TURKISH JOURNAL OF BOTANY
, cilt.47, sa.3, 2023 (SCI-Expanded, Scopus, TRDizin)
2022
20225. Trafficking of Xylan to Plant Cell Walls
Avci U.
Biomass
, cilt.2, sa.3, ss.188-194, 2022 (Scopus)
2022
20226. A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning
AVCI U., Nakashima J.
PLANT GRAVITROPISM
, cilt.2368, ss.153-163, 2022 (SCI-Expanded, Scopus)
2020
20207. Yüksek Frekanslı Elektromanyetik Radyasyon ve Bitki Gelişimi
AVCI U.
Recep Tayyip Erdoğan Üniversitesi Fen ve Mühendislik Bilimleri Dergisi , cilt.1, sa.1, ss.68-73, 2020 (Hakemli Dergi)
2019
20198. Effects of Extractive Ammonia Pretreatment on the Ultrastructure and Glycan Composition of Corn Stover
Avci U., Zhou X., Pattathil S., da Costa Sousa L., Hahn M. G., Dale B., et al.
Frontiers in Energy Research
, cilt.7, 2019 (SCI-Expanded, Scopus)
2019
20199. Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass
da Costa R. M. F., Pattathil S., AVCI U., Winters A., Hahn M. G., Bosch M.
BIOTECHNOLOGY FOR BIOFUELS
, cilt.12, 2019 (SCI-Expanded, Scopus)
2019
201910. The alpha-Aurora Kinases Function in Vascular Development in Arabidopsis
Lee K., Utku A., Qi L., Wang H.
PLANT AND CELL PHYSIOLOGY
, cilt.60, sa.1, ss.188-201, 2019 (SCI-Expanded, Scopus)
2018
201811. Changes in the abundance of cell wall apiogalacturonan and xylogalacturonan and conservation of rhamnogalacturonan II structure during the diversification of the Lemnoideae
Avci U., Peña M. J., O’Neill M. A.
Planta
, cilt.247, sa.4, ss.953-971, 2018 (SCI-Expanded, Scopus)
2017
201712. Cell wall changes during the formation of aerenchyma in sugarcane roots
Leite D., Grandis A., Tavares E., Piovezani A., Pattathil S., Avci U., et al.
Annals of Botany
, cilt.120, sa.5, ss.693-708, 2017 (SCI-Expanded, Scopus)
2017
201713. A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin
da Costa R. M. F., Pattathil S., Avci U., Lee S. J., Hazen S. P., Winters A., et al.
New Phytologist
, cilt.213, sa.4, ss.1710-1725, 2017 (SCI-Expanded, Scopus)
2016
201614. Interactions Between Frankliniella fusca and Pantoea ananatis in the Center Rot Epidemic of Onion (Allium cepa)
Dutta B., Gitaitis R., Barman A., AVCI U., Marasigan K., Srinivasan R.
PHYTOPATHOLOGY
, cilt.106, sa.9, ss.956-962, 2016 (SCI-Expanded, Scopus)
2016
201615. Next-generation ammonia pretreatment enhances cellulosic biofuel production
Da Costa Sousa L., Jin M., Chundawat S. P. S., Bokade V., Tang X., Azarpira A., et al.
Energy and Environmental Science
, cilt.9, sa.4, ss.1215-1223, 2016 (SCI-Expanded, Scopus)
2016
201616. Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae)
Raimundo S. C., Avci U., Hopper C., Pattathil S., Hahn M. G., Popper Z. A.
Planta
, cilt.243, sa.2, ss.337-354, 2016 (SCI-Expanded, Scopus)
2016
201617. Plant biomass: Insights from imaging cell walls using molecular probes
Avci U.
Turkish Journal of Botany
, cilt.40, sa.6, ss.561-565, 2016 (SCI-Expanded, Scopus, TRDizin)
2015
201518. Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis
Srivastava A. C., Chen F., Ray T., Pattathil S., Peña M. J., Avci U., et al.
Biotechnology for Biofuels
, cilt.8, sa.1, 2015 (SCI-Expanded, Scopus)
2015
201519. Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls
Muszyński A., O’Neill M. A., Ramasamy E., Pattathil S., Avci U., Peña M. J., et al.
Planta
, cilt.242, sa.5, ss.1123-1138, 2015 (SCI-Expanded, Scopus)
2015
201520. Pathways of bacterial invasion and watermelon seed infection by Acidovorax citrulli
Dutta B., Ha Y., Lessl J., Avci U., Sparks A., Johnson K., et al.
Plant Pathology
, cilt.64, sa.3, ss.537-544, 2015 (SCI-Expanded, Scopus)
2015
201521. Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in arabidopsis
Kong Y., Peña M. J., Renna L., Avci U., Pattathil S., Tuomivaara S. T., et al.
Plant Physiology
, cilt.167, sa.4, ss.1296-1306, 2015 (SCI-Expanded, Scopus)
2015
201522. Immunological approaches to biomass characterization and utilization
Pattathil S., Avci U., Zhang T., Cardenas C. L., Hahn M. G.
Frontiers in Bioengineering and Biotechnology
, cilt.3, sa.OCT, 2015 (SCI-Expanded, Scopus)
2015
201523. A flat embedding method to orient thin biological samples for sectioning
Avci U., Nakashima J.
Methods in Molecular Biology
, cilt.1309, ss.13-22, 2015 (SCI-Expanded, Scopus)
2015
201524. Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis
Du Q., Avci U., Li S., Gallego-Giraldo L., Pattathil S., Qi L., et al.
Plant Journal
, cilt.83, sa.3, ss.388-400, 2015 (SCI-Expanded, Scopus)
2014
201425. Changes in Cell Wall Properties Coincide with Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells
Tan L., Pu Y., Pattathil S., AVCI U., Qian J., Arter A., et al.
PLOS ONE
, cilt.9, sa.12, 2014 (SCI-Expanded, Scopus)
2014
201426. Loss of arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition
Hao Z., Avci U., Tan L., Zhu X., Glushka J., Pattathil S., et al.
Frontiers in Plant Science
, cilt.5, sa.JUL, 2014 (SCI-Expanded, Scopus)
2014
201427. Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation
Zhang X., Rogowski A., Zhao L., Hahn M. G., Avci U., Knox J. P., et al.
Journal of Biological Chemistry
, cilt.289, sa.4, ss.2002-2012, 2014 (SCI-Expanded, Scopus)
2014
201428. Transmission of pantoea ananatis and P. agglomerans, Causal agents of center Rot of Onion (Allium cepa), by onion thrips (thrips tabaci) through feces
Dutta B., Barman A., Srinivasan R., Avci U., Ullman D., Langston D., et al.
Phytopathology
, cilt.104, sa.8, ss.812-819, 2014 (SCI-Expanded, Scopus)
2013
201329. Cotton Fiber Cell Walls of Gossypium hirsutum and Gossypium barbadense Have Differences Related to Loosely-Bound Xyloglucan
Avci U., Pattathil S., Singh B., Brown V. L., Hahn M. G., Haigler C. H.
PLoS ONE
, cilt.8, sa.2, 2013 (SCI-Expanded, Scopus)
2013
201330. An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein
Tan L., Eberhard S., Pattathil S., Warder C., Glushka J., Yuan C., et al.
Plant Cell
, cilt.25, sa.1, ss.270-287, 2013 (SCI-Expanded, Scopus)
2012
201231. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein
Urbanowicz B. R., Peña M. J., Ratnaparkhe S., Avci U., Backe J., Steet H. F., et al.
Proceedings of the National Academy of Sciences of the United States of America
, cilt.109, sa.35, ss.14253-14258, 2012 (SCI-Expanded, Scopus)
2012
201232. Immunological approaches to plant cell wall and biomass characterization: Immunolocalization of glycan epitopes
Avci U., Pattathil S., Hahn M. G.
Methods in Molecular Biology
, cilt.908, ss.73-82, 2012 (SCI-Expanded, Scopus)
2012
201233. Immunological approaches to plant cell wall and biomass characterization: Glycome profiling
Pattathil S., Avci U., Miller J. S., Hahn M. G.
Methods in Molecular Biology
, cilt.908, ss.61-72, 2012 (SCI-Expanded, Scopus)
2012
201234. Location of Acidovorax citrulli in infested watermelon seeds is influenced by the pathway of bacterial invasion
Dutta B., Avci U., Hahn M., Walcott R.
Phytopathology
, cilt.102, sa.5, ss.461-468, 2012 (SCI-Expanded, Scopus)
2012
201235. The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes
Kulkarni A. R., Peña M. J., Avci U., Mazumder K., Urbanowicz B. R., Pattathil S., et al.
Glycobiology
, cilt.22, sa.3, ss.439-451, 2012 (SCI-Expanded, Scopus)
2012
201236. Mutations in multiple XXT genes of arabidopsis reveal the complexity of xyloglucan biosynthesis
Zabotina O. A., Avci U., Cavalier D., Pattathil S., Chou Y., Eberhard S., et al.
Plant Physiology
, cilt.159, sa.4, ss.1367-1384, 2012 (SCI-Expanded, Scopus)
2011
201137. Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production
DeMartini J. D., Pattathil S., Avci U., Szekalski K., Mazumder K., Hahn M. G., et al.
ENERGY & ENVIRONMENTAL SCIENCE
, cilt.4, sa.10, ss.4332-4339, 2011 (SCI-Expanded, Scopus)
2011
201138. Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen
Joshi C. P., Thammannagowda S., Fujino T., Gou J., Avci U., Haigler C. H., et al.
Molecular Plant
, cilt.4, sa.2, ss.331-345, 2011 (SCI-Expanded, Scopus)
2010
201039. Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants
Wang H., Avci U., Nakashima J., Hahn M. G., Chen F., Dixon R. A.
Proceedings of the National Academy of Sciences of the United States of America
, cilt.107, sa.51, ss.22338-22343, 2010 (SCI-Expanded, Scopus)
2010
201040. A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies
Pattathil S., Avci U., Baldwin D., Swennes A. G., McGill J. A., Popper Z., et al.
PLANT PHYSIOLOGY
, cilt.153, sa.2, ss.514-525, 2010 (SCI-Expanded, Scopus)
2010
201041. Monoclonal antibodies against diverse xyloglucan structures as probes for plant cell wall chemistry and ultrastructure
Tuomivaara S., AVCI U., O'Neill M., Hahn M. G., York W. S.
FASEB JOURNAL
, cilt.24, 2010 (SCI-Expanded, Scopus)
2010
201042. The Bioenergy Science Center (BESC) and Overcoming Recalcitrance of Populus to Biofuel Production
Mohnen D., Biswal A., Hao Zhangying H. Z., Sholes T., Gelineo-Albersheim I., Hunt K., et al.
IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL
, cilt.46, 2010 (SCI-Expanded, Scopus)
2009
200943. Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis
Kong Y., Zhou G., Avci U., Gu X., Jones C., Yin Y., et al.
MOLECULAR PLANT
, cilt.2, sa.5, ss.1040-1050, 2009 (SCI-Expanded, Scopus)
2009
200944. A Specialized Outer Layer of the Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles
Singh B., Avci U., Inwood S. E. E., Grimson M. J., Landgraf J., Mohnen D., et al.
PLANT PHYSIOLOGY
, cilt.150, sa.2, ss.684-699, 2009 (SCI-Expanded, Scopus)
2008
200845. Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots
Avci U., Petzold H. E., Ismail I. O., Beers E. P., Haigler C. H.
PLANT JOURNAL
, cilt.56, sa.2, ss.303-315, 2008 (SCI-Expanded, Scopus)
2008
200846. XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem
Zhao C., Avci U., Grant E. H., Haigler C. H., Beers E. P.
PLANT JOURNAL
, cilt.53, sa.3, ss.425-436, 2008 (SCI-Expanded, Scopus)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler
2024
20241. Overcoming and understanding biomass recalcitrance
Avcı U.
5. AAB PLANTED CONGRESS, Samsun, Türkiye, 30 Ekim - 01 Kasım 2024, ss.38, (Özet Bildiri)
2022
20222. Understanding Transport Routes of Xylan Polysaccharide to Plant Cell Walls
AVCI U.
4th Bioenergy Studies Symposium, Türkiye, 27 Mayıs 2022, (Özet Bildiri)
2022
20223. Turkish blanket bogs as national biodiversity conservation areas
AVCI U., AKAR B.
1st International Symposium of Biodiversity Studies, Ankara, Türkiye, 23 - 25 Mayıs 2022, ss.28, (Özet Bildiri)
2022
20224. Algal biodiversity of Turkish blanket bogs
AKAR B., AVCI U.
1st International Symposium of Biodiversity Studies, Ankara, Türkiye, 23 - 25 Mayıs 2022, ss.53, (Özet Bildiri)
2019
20195. Diversity of Plant Cell Walls
AVCI U.
Eurasian Congress on Molecular Biotechnology, 21 - 23 Eylül 2019, (Özet Bildiri)
2018
20186. Illuminating Plant Cell Walls
AVCI U.
International Congress onBiological and Medical Science, 31 Ekim - 03 Kasım 2018, (Özet Bildiri)
2018
20187. Imaging cell walls of a model grass Brachypodiumdistachyon
AVCI U.
22nd edition of International Conference on Biotechnology, 16 - 17 Nisan 2018, (Özet Bildiri)
2017
20178. Imaging plant cell walls by using molecular probes
AVCI U.
International Conference on Technology, Engineering and Science, 26 Kasım - 29 Aralık 2017, (Özet Bildiri)
2016
20169. Insights from imaging plant cell walls by using molecular probes
AVCI U.
International Conference on Biological Sciences, Konya, Türkiye, 21 - 23 Ekim 2016, (Özet Bildiri)
2015
201510. The cell walls of Spirodela polyrhiza greater duckweed Polysacharide composition and distribution
AVCI U., PATTATHIL S., Michael G H., ONEILL M. A.
Gordon Research Conference on Plant Cell Walls, Waltham, 12 - 17 Temmuz 2015
2015
201511. Effects of extractive ammonia pretreatment on the ultrastructure and glycan composition of plant cell walls
AVCI U., Leonardo da Costa S., Sivakumar P., Venkatesh B., Michael G H., Bruce E D.
37th Symposium on Biotechnology for Fuels and Chemicals, San Diego, Amerika Birleşik Devletleri, 27 - 30 Nisan 2015
2013
201312. Characterization of monoclonal antibodies against xylan epitopes
AVCI U., Pattathil S., Clay R., Mazumder K., York W., Hahn M.
The XIIIth Cell Wall Meeting, Nantes, Fransa, 7 - 12 Temmuz 2013
2011
201113. Insights into plant cell wall structure and dynamics using glycan directed monoclonal antibodies
AVCI U.
5th Annual BioEnergy Science Retreat, Chattanooga, Amerika Birleşik Devletleri, 18 Temmuz 2011
2011
201114. Distribution of cell wall glycans in switchgrass Panicum virgatum
AVCI U.
33rd Symposium on Biotechnology for Fuels and Chemicals, 02 Mayıs 2011
Kitaplar
2024
20241. Genome Editing of Gene Families for Crop Improvement
Avcı U., Sipahi H.
A Roadmap for Plant Genome Editing, Agnès Ricroch • Dennis Eriksson Dragana Miladinović • Jeremy Sweet Katrijn Van Laere • Ewa Woźniak-Gientka, Editör, Springer, Zug, ss.3-15, 2024
2022
20222. A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning
AVCI U., Nakashima J.
Plant Gravitropism, Elison B. Blancaflor, Editör, Humana, New York, NY, New York, ss.153-163, 2022
2016
20163. Bitki Fizyolojisi Laboratuvarı
KADIOĞLU A., SAĞLAM A., AVCI U.
Gündüz Ofset , Matbaacılık ve yayıncılık, 2016
2015
20154. A Flat Embedding Method to Orient Thin Biological Samples for Sectioning
AVCI U., Nakashima J.
Plant Gravitropism, Elison B. Blancaflor, Editör, Springer New York, ss.13-22, 2015
Desteklenen Projeler
2025 - Devam Ediyor
2025 - Devam Ediyor
Çeşitli Stres Faktörlerine Maruz Kalan Alglerin Gübre Kalitesine ve Verimliliğine Etkisi
Yükseköğretim Kurumları Destekli Proje , BAP Y.Lisans
AVCI U. (Yürütücü), ŞANLI F. H.
2024 - Devam Ediyor
2024 - Devam EdiyorMısır Tohumlarında Plazmalanmış Su Ön Uygulamasının Çimlenme Kapasitesi, Tuz Stresine Tolerans ve Fusarium Hastalık Etmenine Etkilerinin İncelenmesi
Yükseköğretim Kurumları Destekli Proje , BAP Araştırma Projesi
TURHAN E. (Yürütücü), GÖZÜKARA Ö., AKAN T., ÜNAL F., AYDOĞAN Ç., ERGİN S., et al.
2021 - 2025
2021 - 2025Türkiye Örtü Turbalıklarının Alg Floralarının Belirlenmesi
TÜBİTAK Projesi , 1001 - Bilimsel ve Teknolojik Araştırma Projelerini Destekleme Programı
Avcı U., Akar B.(Yürütücü)
2020 - 2024
2020 - 2024
Termofil Heliotropium thermophilum Bitkisine Ait İki Ksiloglukan EndoTransglikozilazHidrolaz TranskriptininAşırı İfadesinin Yüksek Sıcaklık Sıcaklık ile Birlikte Kuraklık ve Tuzluluk Kombine Streslerine Toleransındaki RolününAraştırılması
Yükseköğretim Kurumları Destekli Proje , BAP Araştırma Projesi
Avcı U., Kadıoğlu A.(Yürütücü), Sağlam A., Kavas M.
2020 - 2022
2020 - 2022Ksilan Polisakkaritinin Bitki Sekonder Hücre Çeperine Taşınma Yollarının İmmünoelektron Mikroskopi Teknikleri Kullanılarak İncelenmesi
TÜBİTAK Projesi , 1001 - Bilimsel ve Teknolojik Araştırma Projelerini Destekleme Programı
Avcı U. (Yürütücü)
2018 - 2021
2018 - 2021TARIMSAL BİTKİLERDE KÜLLENME HASTALIĞININ ÇÖZÜMÜ İÇİN ANTİFUNGAL PROTEİN VE BİYO-UYARICI İÇERİKLİ BİYOLOJİK PREPARATLARIN GELİŞTİRİLMESİ VE ÜRETİLMESİ
TÜBİTAK Projesi , 1512 - Girişimcilik Aşamalı Destek Programı
Avcı U., Uzuner U.(Yürütücü), Sağlam A.
2016 - 2018
2016 - 2018Bitki Hücre Duvarına Özgün Monoklonal Antikorların Teknolojik Transferi
Diğer Resmi Kurumlarca Desteklenen Proje
Avcı U. (Yürütücü)
Bilimsel Dergilerdeki Faaliyetler
2017 - Devam Ediyor
2017 - Devam EdiyorTurkish Journal of Botany
Editör