Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight

Nakashima J., Pattathil S., Avci U., Chin S., Alan Sparks J., Hahn M. G., et al.
NPJ MICROGRAVITY , vol.9, no.1, 2023 (SCI-Expanded) Creative Commons License identifier identifier identifier

Monoclonal antibodies against methyl glucuronoxylan epitopes for understanding xylan structure and modification

AVCI U.
TURKISH JOURNAL OF BOTANY , vol.47, no.3, 2023 (SCI-Expanded) Creative Commons License identifier identifier

Cell Wall Glycan Changes in Different Brachypodium Tissues Give Insights into Monocot Biomass

Avci U.
Fermentation , vol.9, no.1, pp.52-62, 2023 (SCI-Expanded) identifier identifier

A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning

AVCI U., Nakashima J.
PLANT GRAVITROPISM , vol.2368, pp.153-163, 2022 (SCI-Expanded) identifier identifier

Effects of Extractive Ammonia Pretreatment on the Ultrastructure and Glycan Composition of Corn Stover

Avci U., Zhou X., Pattathil S., da Costa Sousa L., Hahn M. G., Dale B., et al.
Frontiers in Energy Research , vol.7, 2019 (SCI-Expanded) Creative Commons License identifier identifier

Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass

da Costa R. M. F., Pattathil S., AVCI U., Winters A., Hahn M. G., Bosch M.
BIOTECHNOLOGY FOR BIOFUELS , vol.12, 2019 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

The alpha-Aurora Kinases Function in Vascular Development in Arabidopsis

Lee K., Utku A., Qi L., Wang H.
PLANT AND CELL PHYSIOLOGY , vol.60, no.1, pp.188-201, 2019 (SCI-Expanded) identifier identifier identifier

Changes in the abundance of cell wall apiogalacturonan and xylogalacturonan and conservation of rhamnogalacturonan II structure during the diversification of the Lemnoideae

Avci U., Peña M. J., O’Neill M. A.
Planta , vol.247, no.4, pp.953-971, 2018 (SCI-Expanded) Sustainable Development identifier identifier

Cell wall changes during the formation of aerenchyma in sugarcane roots

Leite D., Grandis A., Tavares E., Piovezani A., Pattathil S., Avci U., et al.
Annals of Botany , vol.120, no.5, pp.693-708, 2017 (SCI-Expanded) identifier identifier

A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin

da Costa R. M. F., Pattathil S., Avci U., Lee S. J., Hazen S. P., Winters A., et al.
New Phytologist , vol.213, no.4, pp.1710-1725, 2017 (SCI-Expanded) identifier identifier

Interactions Between Frankliniella fusca and Pantoea ananatis in the Center Rot Epidemic of Onion (Allium cepa)

Dutta B., Gitaitis R., Barman A., AVCI U., Marasigan K., Srinivasan R.
PHYTOPATHOLOGY , vol.106, no.9, pp.956-962, 2016 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

Next-generation ammonia pretreatment enhances cellulosic biofuel production

Da Costa Sousa L., Jin M., Chundawat S. P. S., Bokade V., Tang X., Azarpira A., et al.
Energy and Environmental Science , vol.9, no.4, pp.1215-1223, 2016 (SCI-Expanded) Creative Commons License identifier

Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae)

Raimundo S. C., Avci U., Hopper C., Pattathil S., Hahn M. G., Popper Z. A.
Planta , vol.243, no.2, pp.337-354, 2016 (SCI-Expanded) identifier identifier

Plant biomass: Insights from imaging cell walls using molecular probes

Avci U.
Turkish Journal of Botany , vol.40, no.6, pp.561-565, 2016 (SCI-Expanded) Creative Commons License Sustainable Development identifier

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Srivastava A. C., Chen F., Ray T., Pattathil S., Peña M. J., Avci U., et al.
Biotechnology for Biofuels , vol.8, no.1, 2015 (SCI-Expanded) Creative Commons License identifier identifier

Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls

Muszyński A., O’Neill M. A., Ramasamy E., Pattathil S., Avci U., Peña M. J., et al.
Planta , vol.242, no.5, pp.1123-1138, 2015 (SCI-Expanded) identifier identifier

Pathways of bacterial invasion and watermelon seed infection by Acidovorax citrulli

Dutta B., Ha Y., Lessl J., Avci U., Sparks A., Johnson K., et al.
Plant Pathology , vol.64, no.3, pp.537-544, 2015 (SCI-Expanded) Sustainable Development identifier

Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in arabidopsis

Kong Y., Peña M. J., Renna L., Avci U., Pattathil S., Tuomivaara S. T., et al.
Plant Physiology , vol.167, no.4, pp.1296-1306, 2015 (SCI-Expanded) Sustainable Development identifier identifier

A flat embedding method to orient thin biological samples for sectioning

Avci U., Nakashima J.
Methods in Molecular Biology , vol.1309, pp.13-22, 2015 (SCI-Expanded) Sustainable Development identifier identifier

Immunological approaches to biomass characterization and utilization

Pattathil S., Avci U., Zhang T., Cardenas C. L., Hahn M. G.
Frontiers in Bioengineering and Biotechnology , vol.3, no.OCT, 2015 (SCI-Expanded) Creative Commons License Sustainable Development identifier

Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis

Du Q., Avci U., Li S., Gallego-Giraldo L., Pattathil S., Qi L., et al.
Plant Journal , vol.83, no.3, pp.388-400, 2015 (SCI-Expanded) identifier identifier

Changes in Cell Wall Properties Coincide with Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells

Tan L., Pu Y., Pattathil S., AVCI U., Qian J., Arter A., et al.
PLOS ONE , vol.9, no.12, 2014 (SCI-Expanded) Creative Commons License identifier identifier

Loss of arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition

Hao Z., Avci U., Tan L., Zhu X., Glushka J., Pattathil S., et al.
Frontiers in Plant Science , vol.5, no.JUL, 2014 (SCI-Expanded) Creative Commons License identifier identifier

Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation

Zhang X., Rogowski A., Zhao L., Hahn M. G., Avci U., Knox J. P., et al.
Journal of Biological Chemistry , vol.289, no.4, pp.2002-2012, 2014 (SCI-Expanded) Creative Commons License identifier identifier

Transmission of pantoea ananatis and P. agglomerans, Causal agents of center Rot of Onion (Allium cepa), by onion thrips (thrips tabaci) through feces

Dutta B., Barman A., Srinivasan R., Avci U., Ullman D., Langston D., et al.
Phytopathology , vol.104, no.8, pp.812-819, 2014 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

Cotton Fiber Cell Walls of Gossypium hirsutum and Gossypium barbadense Have Differences Related to Loosely-Bound Xyloglucan

Avci U., Pattathil S., Singh B., Brown V. L., Hahn M. G., Haigler C. H.
PLoS ONE , vol.8, no.2, 2013 (SCI-Expanded) Creative Commons License identifier identifier

An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein

Tan L., Eberhard S., Pattathil S., Warder C., Glushka J., Yuan C., et al.
Plant Cell , vol.25, no.1, pp.270-287, 2013 (SCI-Expanded) identifier identifier

4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein

Urbanowicz B. R., Peña M. J., Ratnaparkhe S., Avci U., Backe J., Steet H. F., et al.
Proceedings of the National Academy of Sciences of the United States of America , vol.109, no.35, pp.14253-14258, 2012 (SCI-Expanded) Creative Commons License identifier identifier

Immunological approaches to plant cell wall and biomass characterization: Glycome profiling

Pattathil S., Avci U., Miller J. S., Hahn M. G.
Methods in Molecular Biology , vol.908, pp.61-72, 2012 (SCI-Expanded) identifier identifier

Immunological approaches to plant cell wall and biomass characterization: Immunolocalization of glycan epitopes

Avci U., Pattathil S., Hahn M. G.
Methods in Molecular Biology , vol.908, pp.73-82, 2012 (SCI-Expanded) identifier identifier

Location of Acidovorax citrulli in infested watermelon seeds is influenced by the pathway of bacterial invasion

Dutta B., Avci U., Hahn M., Walcott R.
Phytopathology , vol.102, no.5, pp.461-468, 2012 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes

Kulkarni A. R., Peña M. J., Avci U., Mazumder K., Urbanowicz B. R., Pattathil S., et al.
Glycobiology , vol.22, no.3, pp.439-451, 2012 (SCI-Expanded) Sustainable Development identifier identifier

Mutations in multiple XXT genes of arabidopsis reveal the complexity of xyloglucan biosynthesis

Zabotina O. A., Avci U., Cavalier D., Pattathil S., Chou Y., Eberhard S., et al.
Plant Physiology , vol.159, no.4, pp.1367-1384, 2012 (SCI-Expanded) identifier identifier

Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production

DeMartini J. D., Pattathil S., Avci U., Szekalski K., Mazumder K., Hahn M. G., et al.
ENERGY & ENVIRONMENTAL SCIENCE , vol.4, no.10, pp.4332-4339, 2011 (SCI-Expanded) identifier

Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen

Joshi C. P., Thammannagowda S., Fujino T., Gou J., Avci U., Haigler C. H., et al.
Molecular Plant , vol.4, no.2, pp.331-345, 2011 (SCI-Expanded) Creative Commons License identifier identifier

Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

Wang H., Avci U., Nakashima J., Hahn M. G., Chen F., Dixon R. A.
Proceedings of the National Academy of Sciences of the United States of America , vol.107, no.51, pp.22338-22343, 2010 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies

Pattathil S., Avci U., Baldwin D., Swennes A. G., McGill J. A., Popper Z., et al.
PLANT PHYSIOLOGY , vol.153, no.2, pp.514-525, 2010 (SCI-Expanded) identifier identifier

Monoclonal antibodies against diverse xyloglucan structures as probes for plant cell wall chemistry and ultrastructure

Tuomivaara S., AVCI U., O'Neill M., Hahn M. G., York W. S.
FASEB JOURNAL , vol.24, 2010 (SCI-Expanded) identifier

The Bioenergy Science Center (BESC) and Overcoming Recalcitrance of Populus to Biofuel Production

Mohnen D., Biswal A., Hao Zhangying H. Z., Sholes T., Gelineo-Albersheim I., Hunt K., et al.
IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL , vol.46, 2010 (SCI-Expanded) identifier

Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis

Kong Y., Zhou G., Avci U., Gu X., Jones C., Yin Y., et al.
MOLECULAR PLANT , vol.2, no.5, pp.1040-1050, 2009 (SCI-Expanded) Creative Commons License identifier identifier

A Specialized Outer Layer of the Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles

Singh B., Avci U., Inwood S. E. E., Grimson M. J., Landgraf J., Mohnen D., et al.
PLANT PHYSIOLOGY , vol.150, no.2, pp.684-699, 2009 (SCI-Expanded) Sustainable Development identifier identifier

Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

Avci U., Petzold H. E., Ismail I. O., Beers E. P., Haigler C. H.
PLANT JOURNAL , vol.56, no.2, pp.303-315, 2008 (SCI-Expanded) Sustainable Development identifier identifier identifier

XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem

Zhao C., Avci U., Grant E. H., Haigler C. H., Beers E. P.
PLANT JOURNAL , vol.53, no.3, pp.425-436, 2008 (SCI-Expanded) identifier identifier identifier

Articles Published in Other Journals

Trafficking of Xylan to Plant Cell Walls

Avci U.
Biomass , vol.2, no.3, pp.188-194, 2022 (Peer-Reviewed Journal) Sustainable Development

Yüksek Frekanslı Elektromanyetik Radyasyon ve Bitki Gelişimi

AVCI U.
Recep Tayyip Erdoğan Üniversitesi Fen ve Mühendislik Bilimleri Dergisi , vol.1, no.1, pp.68-73, 2020 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

Understanding Transport Routes of Xylan Polysaccharide to Plant Cell Walls

AVCI U.
4th Bioenergy Studies Symposium, Turkey, 27 May 2022

Turkish blanket bogs as national biodiversity conservation areas

AVCI U., AKAR B.
1st International Symposium of Biodiversity Studies, Ankara, Turkey, 23 - 25 May 2022, pp.28

Algal biodiversity of Turkish blanket bogs

AKAR B., AVCI U.
1st International Symposium of Biodiversity Studies, Ankara, Turkey, 23 - 25 May 2022, pp.53

Diversity of Plant Cell Walls

AVCI U.
Eurasian Congress on Molecular Biotechnology, 21 - 23 September 2019

Illuminating Plant Cell Walls

AVCI U.
International Congress onBiological and Medical Science, 31 October - 03 November 2018

Imaging cell walls of a model grass Brachypodiumdistachyon

AVCI U.
22nd edition of International Conference on Biotechnology, 16 - 17 April 2018

Imaging plant cell walls by using molecular probes

AVCI U.
International Conference on Technology, Engineering and Science, 26 November - 29 December 2017

Insights from imaging plant cell walls by using molecular probes

AVCI U.
International Conference on Biological Sciences, Konya, Turkey, 21 - 23 October 2016

The cell walls of Spirodela polyrhiza greater duckweed Polysacharide composition and distribution

AVCI U., PATTATHIL S., Michael G H., ONEILL M. A.
Gordon Research Conference on Plant Cell Walls, Waltham, 12 - 17 July 2015

Effects of extractive ammonia pretreatment on the ultrastructure and glycan composition of plant cell walls

AVCI U., Leonardo da Costa S., Sivakumar P., Venkatesh B., Michael G H., Bruce E D.
37th Symposium on Biotechnology for Fuels and Chemicals, San Diego, United States Of America, 27 - 30 April 2015

Characterization of monoclonal antibodies against xylan epitopes

AVCI U., Pattathil S., Clay R., Mazumder K., York W., Hahn M.
The XIIIth Cell Wall Meeting, Nantes, France, 7 - 12 July 2013

Insights into plant cell wall structure and dynamics using glycan directed monoclonal antibodies

AVCI U.
5th Annual BioEnergy Science Retreat, Chattanooga, United States Of America, 18 July 2011

Distribution of cell wall glycans in switchgrass Panicum virgatum

AVCI U.
33rd Symposium on Biotechnology for Fuels and Chemicals, 02 May 2011

Books & Book Chapters

A Flat Embedding Method to Orient Gravistimulated Root Samples for Sectioning

AVCI U., Nakashima J.
in: Plant Gravitropism, Elison B. Blancaflor, Editor, Humana, New York, NY, New York, pp.153-163, 2022

Bitki Fizyolojisi Laboratuvarı

KADIOĞLU A., SAĞLAM A., AVCI U.
Gündüz Ofset , Matbaacılık ve yayıncılık, 2016

A Flat Embedding Method to Orient Thin Biological Samples for Sectioning

AVCI U., Nakashima J.
in: Plant Gravitropism, Elison B. Blancaflor, Editor, Springer New York, pp.13-22, 2015

Metrics

Publication

61

Citation (WoS)

752

H-Index (WoS)

8

Citation (Scopus)

1810

H-Index (Scopus)

20

Project

5

Open Access

19
UN Sustainable Development Goals